Projects

Bonsai.ML

Machine learning for the Bonsai visual reactive programming language: deep learning via TorchSharp, Kalman filters, hidden Markov models, and neural decoding. 12 packages, 16,000+ downloads.

PointProcessDecoder

Real-time Bayesian state-space neural decoder with point-process and marked point-process observations, in C#/.NET with TorchSharp. CPU and CUDA builds for Linux and Windows. 7 packages, 23,000+ downloads.

BonZeb

Kinematic tracking, closed-loop stimulation, and behavioural analysis for high-speed real-time experiments. Adopted as a tracking method in publications in Nature, Cell, and Current Biology.

bonsai-nix

Nix flake for running Bonsai on Linux with a patched Wine build, CUDA support, and NixOS and Home Manager modules.